globalchange  > 气候减缓与适应
DOI: 10.1111/eva.12641
WOS记录号: WOS:000454198200010
论文题名:
Demography and rapid local adaptation shape Creole cattle genome diversity in the tropics
作者: Pitt, Daniel1; Bruford, Michael W.1,2; Barbato, Mario3; Orozco-terWengel, Pablo1; Martinez, Rodrigo4; Sevane, Natalia1
通讯作者: Sevane, Natalia
刊名: EVOLUTIONARY APPLICATIONS
ISSN: 1752-4571
出版年: 2019
卷: 12, 期:1, 页码:105-122
语种: 英语
英文关键词: Bos primigenius taurus ; Criollo ; demographic history ; GDNF ; selection signatures ; slick hair coat
WOS关键词: NATURAL-SELECTION ; GENETIC-STRUCTURE ; ASSOCIATION ; ANCESTRY ; HISTORY ; SIGNATURES ; INFERENCE ; PLINK ; TOOL
WOS学科分类: Evolutionary Biology
WOS研究方向: Evolutionary Biology
英文摘要:

The introduction of Iberian cattle in the Americas after Columbus' arrival imposed high selection pressures on a limited number of animals over a brief period of time. Knowledge of the genomic regions selected during this process may help in enhancing climatic resilience and sustainable animal production. We first determined taurine and indicine contributions to the genomic structure of modern Creole cattle. Second, we inferred their demographic history using approximate Bayesian computation (ABC), linkage disequilibrium (LD) and N-e Slope (NeS) analysis. Third, we performed whole genome scans for selection signatures based on cross-population extended haplotype homozygosity (XP-EHH) and population differentiation (F-ST) to disentangle the genetic mechanisms involved in adaptation and phenotypic change by a rapid and major environmental transition. To tackle these questions, we combined SNP array data (similar to 54,000 SNPs) in Creole breeds with their modern putative Iberian ancestors. Reconstruction of the population history of Creoles from the end of the 15th century indicated a major demographic expansion until the introduction of zebu and commercial breeds into the Americas similar to 180 years ago, coinciding with a drastic N-e contraction. NeS analysis provided insights into short-term complexity in population change and depicted a decrease/expansion episode at the end of the ABC-inferred expansion, as well as several additional fluctuations in N-e with the attainment of the current small N-e only towards the end of the 20th century. Selection signatures for tropical adaptation pinpointed the thermoregulatory slick hair coat region, identifying a new candidate gene (GDNF), as well as novel candidate regions involved in immune function, behavioural processes, iron metabolism and adaptation to new feeding conditions. The outcomes from this study will help in future-proofing farm animal genetic resources (FAnGR) by providing molecular tools that allow selection for improved cattle performance, resilience and welfare under climate change.


Citation statistics:
被引频次[WOS]:44   [查看WOS记录]     [查看WOS中相关记录]
资源类型: 期刊论文
标识符: http://119.78.100.158/handle/2HF3EXSE/127270
Appears in Collections:气候减缓与适应

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作者单位: 1.Cardiff Univ, Sch Biosci, Cardiff, S Glam, Wales
2.Cardiff Univ, Sustainable Pl Res Inst, Cardiff, S Glam, Wales
3.Univ Cattolica Sacro Cuore, Inst Zootech, Piacenza, Italy
4.Corp Colombiana Invest Agr Corpoica, Ctr Invest Tibaitata, Bogota, Colombia

Recommended Citation:
Pitt, Daniel,Bruford, Michael W.,Barbato, Mario,et al. Demography and rapid local adaptation shape Creole cattle genome diversity in the tropics[J]. EVOLUTIONARY APPLICATIONS,2019-01-01,12(1):105-122
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