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Many agricultural soils are file drained in order to lower water tables and improve crop production, but file drains have a large impact on water flows and nutrient transport. The objectives of the study were to assess modelling requirements for describing shallow groundwater and file drainage dynamics and to evaluate how file drains affect groundwater flow across the redox interface, where nitrate reduction in the subsurface occurs. The study was conducted on a 33-hectare file drained field within a Weichsel fill area in Fensholt catchment, Denmark. The study consisted of 2.5 years high-frequency monitoring and numerical modelling using a variably-saturated 3D hydrological model (FEFLOW) with a detailed representation of the file drain network. Field data showed extremely rapid increases, up to 1 m per day, in the groundwater heads when the autumn water surplus starts. Drain discharge was found to follow the dynamics in heads. High-frequency monitoring (at least once per day) is therefore necessary in order to capture the dynamics in shallow groundwater and file discharge. The dynamics showed simultaneous rapid increase in groundwater heads down to a depth of 22 m, illustrating the key importance of deeper geology in understanding the hydrological processes in this area. The temporal dynamics in head and drain discharge were successfully captured by the hydrological model and the steepness of the retention curve was found to be important for this. The calibrated model was successfully tested against discharge in the stream draining a larger area. The model results showed, that file drains affect the water flow in the area and significantly decrease the downward fluxes across the redox interface, located on average at 3.6 m depth. Tile drains therefore have a large effect on the amount of nitrate reduction in the subsurface and on the nitrate fluxes to receiving surface waters.