The replacement of seed-free plants and gymnosperms by flowering plants during the Cretaceous is one of the most important biotic events in the evolution of life. However, the magnitude of this global turnover remains largely unknown. Here we present sampling-standardized diversity estimates from a high resolution palynological record of the Late Cretaceous (85-66 Ma) from Antarctica, in the context of the past climatic events. Our fossil evidence reveals the occurrence of a rich Campanian flora peaking at c. 80 Ma, with angiosperms as the most diverse group of plants for the first time in Antarctica. This peak of diversity was followed by a period of a stepwise deterioration; 60% of ferns and 40% of gymnosperms became locally extinct from the early/mid-Campanian to the late Maastrichtian. Although angiosperms also faced several extinctions - 25% became extinct - they were far less affected than nonangiosperms. The onset of deterioration of the greenhouse conditions at the end of the Cretaceous - low CO2 and global cooling trends - would have led to our observed pattern of change. Overall, our study reveals the beginning of a profound floristic turnover in the highest southern latitudes that pre-dates the major extinction event of the end of the Cretaceous by 15 Myr.