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In temperate mono-rice paddy fields, rice is cultivated for 100-140 days under submerged conditions during the summer period, and thereafter, the field remains under dry conditions during the winter and spring seasons. However, the early developed nitrous oxide (N2O) emission factor (EF) was only based on seasonal (rice cropping period) N2O fluxes, which resulted in lower N2O EF than the default value (0.3%) used by the Intergovernmental Panel on Climate Change (IPCC). Furthermore, the long fallow season may be favorable for nitrification and substantially result in increased N2O emissions. A two-year field experiment was conducted to evaluate the effect of N2O emissions during the dry fallow season on the annual N2O EF. The N2O emission rates were sequentially characterized during the rice cropping and the fallow season under four different levels of nitrogen (N) fertilizer for rice cultivation. The urea was applied at four different (0, 45, 90 and 180 kg N ha(-1)) levels, and rice was cultivated under submerged conditions during late May to early October. The seasonal N2O fluxes during the rice cropping and fallow seasons clearly increased with increasing N application rates. In the N fertilized plots, the mean N2O emission rates were higher during the fertilized cropping season than the fallow season, but the seasonal fluxes were much higher during the unfertilized fallow season, due to the long dry period. The seasonal N2O EF, which was estimated by the increased N2O flux with N fertilizer, was only 0.0015-0.0017 kg N2O-N kg(-1) N during rice cropping. However, the annual N2O EF combining the two seasonal N2O fluxes markedly increased to 0.0028-0.0031 kg N2O-N kg(-1) N, which was very close to the N2O EF of the IPCC. Conclusively, the N2O EF in mono-rice paddy fields should be developed using the annual N2O fluxes and not only the cropping seasonal N2O fluxes.