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An analysis of the extent of overlap between habitats of the Egyptian Vulture Neophron percnopterus during summer and winter in Iran, and Iranian protected areas, discovered slight overlap between the two. Our study aimed to survey suitable habitats of the Egyptian Vulture during summer and winter in Iran using MaxEnt, a species distribution modelling method, and compare the results with the locations and span of protected areas. Model fitness was assessed using the area under the ROC-plot and True Skill Statistics. We found that habitat suitability in Iran varies for the Egyptian Vulture during summer and winter. Summer visitors are scattered in the north and west of Iran, concentrated along the Zagros and Alborz mountain ranges. Winter visitors and residents are scattered in coastal areas in the south. Habitat protection for winter visitors was the greatest, with 10% of suitable habitat covered, while less than 10% of suitable habitat for residents and summer visitors fell within protected areas. The Egyptian Vulture is categorised as 'Endangered' on the IUCN Red List. Different environmental factors influence the suitability of habitat for the species. While some factors such as NDVI and anthropogenic disturbance influence all visitors in a similar way, the effects of others such as elevation and distance from protected areas vary for summer and winter visitors. Since designation of protected areas in Iran is mainly determined by the distribution of mammal species, protection of bird habitats is often overlooked. Suitable habitat for the species should be considered when selecting protected areas in future.