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Reef-protected beaches are vulnerable to the effects of sea level rise and degradation of their associated fringing reefs. The SWAN hydrodynamic wave model is combined with classical theory describing the planform of beaches in equilibrium with the wave forcing to estimate the reef top hydrodynamics and the shoreline configuration in the lee of the reefs. Open access Bayesian Belief Networks with high accuracy and simple user interfaces have been built to communicate the results. The BBN enable end users to access all the model results and to compare different scenario to determine how changes in the wave climate or reef elevation change the shoreline configuration. The results show that recession of the shoreline in the lee of fringing reefs due to sea level rise may be much greater than that expected on open coast beaches. Loss of reef flat elevation can also lead to severe shoreline erosion.