globalchange  > 气候变化事实与影响
DOI: doi:10.1038/nclimate2438
论文题名:
Weaker soil carbon–climate feedbacks resulting from microbial and abiotic interactions
作者: Jinyun Tang
刊名: Nature Climate Change
ISSN: 1758-1109X
EISSN: 1758-7229
出版年: 2014-11-17
卷: Volume:5, 页码:Pages:56;60 (2015)
语种: 英语
英文关键词: Biogeochemistry
英文摘要:

The large uncertainty in soil carbon–climate feedback predictions has been attributed to the incorrect parameterization of decomposition temperature sensitivity (Q10; ref. 1) and microbial carbon use efficiency2. Empirical experiments have found that these parameters vary spatiotemporally3, 4, 5, 6, but such variability is not included in current ecosystem models7, 8, 9, 10, 11, 12, 13. Here we use a thermodynamically based decomposition model to test the hypothesis that this observed variability arises from interactions between temperature, microbial biogeochemistry, and mineral surface sorptive reactions. We show that because mineral surfaces interact with substrates, enzymes and microbes, both Q10 and microbial carbon use efficiency are hysteretic (so that neither can be represented by a single static function) and the conventional labile and recalcitrant substrate characterization with static temperature sensitivity is flawed. In a 4-K temperature perturbation experiment, our fully dynamic model predicted more variable but weaker soil carbon–climate feedbacks than did the static Q10 and static carbon use efficiency model when forced with yearly, daily and hourly variable temperatures. These results imply that current Earth system models probably overestimate the response of soil carbon stocks to global warming. Future ecosystem models should therefore consider the dynamic interactions between sorptive mineral surfaces, substrates and microbial processes.

Most ecosystem models used for soil carbon–climate feedback predictions use the turnover pool based structure and static Q10 for soil carbon dynamics7, 8, but these models underestimate soil carbon variability14 and predict very uncertain soil carbon stocks15. Some recent microbe-explicit models, aiming to improve soil carbon modelling, explicitly consider microbe–mineral–surface interactions9, 10, 11, 12, 13. These models have shown that microbial carbon use efficiency (CUE) is an important controller of carbon decomposition in response to temperature change11, 12, but dynamic interaction of CUE with temperature-dependent adsorption is rarely investigated (except see ref. 9). Further, in representing respiration and its response to temperature change, many of these microbe-explicit models impose static CUE (refs 9, 10, 11, 12), and some even characterize carbon substrates using the conventional ‘labile’ and ‘recalcitrant’ paradigm13, but empirical experiments5, 6, 16 and our results described below challenge each of these concepts.

In addition to binding to polymeric soil organic matter (SOM), extracellular enzymes can adsorb to mineral surfaces and temporarily lose their capacity to degrade SOM (ref. 17). Our model (Supplementary Fig. 1) therefore allows SOM and mineral surfaces to compete for extracellular enzyme binding, such that increasing mineral surface area inhibits SOM degradation into dissolvable organic matter (DOM), all else equal. Simultaneously, DOM competes with extracellular enzymes for mineral surface adsorption and mineral surface adsorption competes with microbes for DOM. The model forms a network of SOM, DOM, microbes, extracellular enzymes and mineral surfaces, and models their competitive interactions using equilibrium chemistry approximation kinetics18.

We predicted CUE using the dynamic energy budget (DEB) theory19, which allows for a thermodynamically consistent treatment of the balance between structural maintenance, structural growth and extracellular enzyme production in microbial metabolism. Our DEB model includes an internal reserve pool, which buffers between environmental substrate uptake and microbial cell metabolism. A reserve pool could increase microbes’ plasticity under environmental stress20. We illustrate the role of microbial plasticity by analysing a second model, identical except that it has no reserve pool (called a ‘rigid’ microbe).

To resolve the variability of the soil carbon decomposition temperature sensitivity, in contrast to using a static Q10 (or Arrhenius activation energy) and CUE, we explicitly modelled the temperature dependencies (Methods) of enzymatic SOM degradation, microbial DOM uptake, microbial reserve pool turnover, mineral surface sorption and microbial maintenance, and implicitly for microbial cell growth and enzyme production (see Supplementary Methods). We calibrated (Methods) and evaluated the model (Supplementary Table 1) to be qualitatively consistent with 14 emergent empirical metrics (Supplementary Table 2) and addressed parameterization uncertainty through perturbation simulations.

We identified three salient emergent responses from our transient simulations (Fig. 1). First, higher mineral surface adsorption capacity leads to lower respiration per total soil carbon mass (see contrast between Fig. 1a–c). Second, temperature sensitivity has large variability, depending, to various degrees, on many properties of the system. Third, the daily averaged respiration (red and green solid lines in Fig. 1) has lower temperature sensitivity and smaller range than does the original hourly respiration (blue and grey dots in Fig. 1), implying that models derived from coarse temporal resolution (daily) data will lead to error when applied at fine temporal resolution (hourly scales).

Figure 1: Relationships between total-SOM-weighted respiration (rCO2) and temperature under parameter perturbations.
Relationships between total-SOM-weighted respiration (rCO2) and temperature under parameter perturbations.

a, Simulation with lower adsorption capacity. b, Reference simulation. c, Simulation with higher adsorption capacity. d, Simulation with higher sorption activation energy. e, Simulation with lower substrate activation energy. f, Simulation with seasonal carbon input. Parameters for the reference simulation are in Supplementary Table 1. The daily data are averages from the corresponding hourly data. All outputs are from the last year of the 100-year simulations. The red arrow in a indicates the transition from winter through spring to summer; the blue arrow indicates the transition from summer through autumn to winter. rCO2, total SOM stock weighted respiration; M, mineral surface sites; Ceqv, carbon equivalent; G, Gibbs energy; kMC, affinity parameter for mineral surface adsorption of DOM; kME, affinity parameter for mineral surface adsorption of enzymes; VEmax, maximum processing rate of enzymatic SOM degradation; VBmax, maximum processing rate of DOM assimilation.

We explicitly modelled the different temperature-dependent processes by grouping them into three categories: equilibrium processes, non-equilibrium forward reactions, and enzyme activation, which are, respectively, represented by the Arrhenius equation1, Eyring’s transition state theory28, and the equation in ref. 29. We described their relevant equations in Supplementary Methods.

Our analyses in this paper focused solely on carbon, although we are designing a model to resolve soil carbon dynamics with multiple chemical elements and a range of different substrates. As in other studies, we excluded trophic dynamics, and we discuss the implication of this decision in Supplementary Methods. As we were not able to identify a single observational data set to constrain every aspect of our model, we calibrated the parameter qualitatively (Supplementary Table 2). Specifically, we collected or inferred model parameters from existing literature whenever possible. Some parameters, such as maximum production rate, enzyme decay rate and cell mortality, were numerically inferred to ensure the steady-state solutions predict microbial biomass to carbon storage ratios within the range derived by empirical studies (see Supplementary Methods). The maximum cell growth rate was inverted from the steady-state solution, with all other parameters assigned.

Initial conditions for the transient spinup simulations were taken from the corresponding steady-state constant forcing analytical solution. The numerical solutions were obtained using adaptive time step integration and were verified with steady-state solutions (Supplementary Fig. 3).

The temperature forcing used for transient simulations is

where T is temperature (K), t is time (day), and δ1 and δ2 are indices for seasonal and diurnal cycles, respectively. To remove the diurnal cycle, δ2 is set to 0, and to remove the seasonal cycle, δ1 is set to 0.

Numerical incubation experiments were conducted by first running the model to equilibrium, then setting the carbon input rate to zero, and then continuing the simulation for three years at 11 different temperatures (274–314 K with increments of 4 K). Initial conditions for different incubation experiments were sampled from the equilibrium period when the transient temperature was at 290 K, that is, the reference temperature where the enzymes and microbes have their peak activity. This approach produces two different initial conditions for each transient simulation with seasonally varying temperature forcing, one from the first half-year (that is daily-1 and hourly-1 in Fig. 2e, f) and the other from the second half-year (that is daily-2 and hourly-2 in Fig. 2e, f; also see Supplementary Fig. 6a for further information). As such, each of the plastic and rigid microbial models has five simulations with different initial conditions for the incubation experiments (Fig. 2e, f and Supplementary Fig. 6b).

We described the methods to determine the emergent temperature sensitivity in Supplementary Methods. We reported all temperature sensitivities in terms of relative sensitivity of decomposition rates and respiration rates, such that in the conventional Q10 or Arrhenius-equation-based theory, higher substrate activation energy corresponds to higher temperature sensitivity24.

We described the CUE-static model in the Supplementary Methods. Essentially, it replaces the dynamic CUE using the CUE predicted from the model’s steady-state solution (Fig. 2a), all else equal. The CUE-static model predicts identical equilibrium carbon stocks to that by the CUE-prognostic model under constant temperature forcing (Fig. 3a, d and Supplementary Fig. 7). A discussion on the static-Q10 model is also provided in the Supplementary Methods.

To analyse the change in total soil carbon stocks in response to temperature perturbations, we ran the models for 100 years to equilibrium and then abruptly changed the temperature by ±4 K and continued the simulations for another 50 years to new equilibrium. However, in all simulations, the first equilibrium was reached approximately in 40 years and the second equilibrium (after perturbation) was reached approximately in 20 years (except the cooling experiment for the CUE-static model at daily constant temperature, which took slightly longer; see Fig. 2e). The simulations were conducted for temperature forcings of three different types of temporal variability, including constant temperature, seasonally varying temperature at daily time steps, and both seasonally and diurnally varying temperature at hourly time steps. We reported the spinup simulations (corresponding to Fig. 3) in the Supplementary Methods (Supplementary Fig. 7).

  1. Lloyd, J. & Taylor, J. A. On the temperature-dependence of soil respiration. Funct. Ecol. 8, 315323 (1994).
  2. Sinsabaugh, R.L., Manzoni, S., Moorhead, D. L. & Richter, A. Carbon use efficiency of microbial communities: Stoichiometry, methodology and modelling. Ecol. Lett. 16, 930939 (2013).
  3. Janssens, I. A. & Pilegaard, K. Large seasonal changes in Q10 of soil respiration in a beech forest. Glob. Change Biol. 9, 911918 (2003).
  4. Pavelka, M., Acosta, M., Marek, M.V., Kutsch, W. & Janous, D. Dependence of the Q10 values on the depth of the soil temperature measuring point. Plant Soil 292, 171179 (2007). URL:
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资源类型: 期刊论文
标识符: http://119.78.100.158/handle/2HF3EXSE/4937
Appears in Collections:气候变化事实与影响
科学计划与规划
气候变化与战略

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Jinyun Tang. Weaker soil carbon–climate feedbacks resulting from microbial and abiotic interactions[J]. Nature Climate Change,2014-11-17,Volume:5:Pages:56;60 (2015).
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