DOI: 10.1016/j.marpolbul.2016.05.009
Scopus记录号: 2-s2.0-84962362231
论文题名: Metagenomic analysis between free-living and cultured Epinephelus fuscoguttatus under different environmental conditions in Indonesian waters
作者: Hennersdorf P. ; Mrotzek G. ; Abdul-Aziz M.A. ; Saluz H.P.
刊名: Marine Pollution Bulletin
ISSN: 0025-326X
EISSN: 1879-3363
出版年: 2016
卷: 110, 期: 2 起始页码: 726
结束页码: 734
语种: 英语
英文关键词: Epinephelus fuscoguttatus
; Fish
; Functional annotation
; Jakarta
; Metagenome
; Microbiome
Scopus关键词: Bacteria
; DNA
; Gene encoding
; Marine biology
; Epinephelus fuscoguttatus
; Functional annotation
; Jakarta
; Metagenomes
; Microbiome
; Fish
; antibiotic agent
; DNA
; biome
; DNA
; environmental conditions
; eukaryote
; feces
; genome
; genomics
; perciform
; prokaryote
; Alphaproteobacteria
; animal tissue
; Article
; DNA isolation
; DNA metabolism
; DNA repair
; environmental enrichment
; environmental factor
; Epinephelus
; Epinephelus fuscoguttatus
; eukaryote
; feces analysis
; genetic analysis
; Indonesia
; mariculture
; metagenomics
; nonhuman
; ontology
; ordo
; pisciculture
; prokaryote
; Pseudomonadales
; Rhizobiales
; sequence analysis
; species difference
; species distribution
; taxonomy
; Vibrionales
; animal
; bass
; DNA sequence
; environmental monitoring
; feces
; fishery
; Gammaproteobacteria
; genetics
; growth, development and aging
; isolation and purification
; microbiology
; microflora
; procedures
; Greater Sunda Islands
; Jakarta
; Jakarta Bay
; Java
; Sunda Isles
; Alphaproteobacteria
; Bacteria (microorganisms)
; Epinephelus fuscoguttatus
; Eukaryota
; Prokaryota
; Rhizobiales
; Vibrionales
; Alphaproteobacteria
; Animals
; Bass
; Environmental Monitoring
; Feces
; Fisheries
; Gammaproteobacteria
; Indonesia
; Metagenomics
; Microbiota
; Sequence Analysis, DNA
Scopus学科分类: Agricultural and Biological Sciences: Aquatic Science
; Earth and Planetary Sciences: Oceanography
; Environmental Science: Pollution
英文摘要: In this study, we analyzed and compared feces of free-living and cultivated fish species, Epinephelus fuscoguttatus under different environmental conditions in Indonesian waters. Metagenome analysis was performed using Illumina MiSeq sequencing of the whole metagenomic DNA isolated from fish feces samples. The analysis covered both prokaryotic and eukaryotic DNA. Feces samples from mariculture fish revealed a highly stable distribution of several orders of bacteria when compared to samples from free-living fish, which were highly diverse and dominated by Vibrionales, Pseudomonales, Rhizobiales and non-classifiable Alphaproteobacteria. The eukaryotic content of the samples was dominated by residues of the host and nine additional fish species that formed a portion of the diet. Investigations on functional annotations for predominant bacterial taxa, using Gene Ontology enrichment, revealed a number of functions related to DNA metabolic processes, especially DNA repair, as well as antibiotic response in the free-living fish species. © 2016 Elsevier Ltd Citation statistics:
资源类型: 期刊论文
标识符: http://119.78.100.158/handle/2HF3EXSE/86770
Appears in Collections: 过去全球变化的重建 全球变化的国际研究计划
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作者单位: Leibniz-Institute for Natural Product Research and Infection Biology, Beutenbergstr. 11a, Jena, Germany; Friedrich Schiller University of Jena, Fürstengraben 1, Jena, Germany; Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia
Recommended Citation:
Hennersdorf P.,Mrotzek G.,Abdul-Aziz M.A.,et al. Metagenomic analysis between free-living and cultured Epinephelus fuscoguttatus under different environmental conditions in Indonesian waters[J]. Marine Pollution Bulletin,2016-01-01,110(2)