DOI: 10.1016/j.marpolbul.2016.03.043
Scopus记录号: 2-s2.0-84963652915
论文题名: Microbiome analysis and detection of pathogenic bacteria of Penaeus monodon from Jakarta Bay and Bali
作者: Oetama V.S.P. ; Hennersdorf P. ; Abdul-Aziz M.A. ; Mrotzek G. ; Haryanti H. ; Saluz H.P.
刊名: Marine Pollution Bulletin
ISSN: 0025-326X
EISSN: 1879-3363
出版年: 2016
卷: 110, 期: 2 起始页码: 718
结束页码: 725
语种: 英语
英文关键词: Aquaculture
; Bali
; Fecal microbiome
; Free-living
; Jakarta
; Penaeus monodon
Scopus关键词: Aquaculture
; Polymerase chain reaction
; Shellfish
; Water pollution
; Bali
; Free livings
; Jakarta
; Microbiome
; Penaeus monodon
; Bacteria
; water
; aquaculture system
; bacterium
; biome
; detection method
; disease incidence
; dominance
; fecal pellet
; marine pollution
; microbial activity
; pathogen
; shrimp culture
; viral disease
; Article
; bacterium detection
; bacterium identification
; Bacteroidetes
; bay
; feces microflora
; Firmicutes
; Fusobacteria
; Indonesia
; infectious hypodermal and hematopoietic necrosis virus
; microbiological examination
; next generation sequencing
; nonhuman
; Penaeus monodon
; Photobacterium damselae
; phylum
; polymerase chain reaction
; Proteobacteria
; Pseudoalteromonas
; quantitative analysis
; species diversity
; taxonomy
; Vibrio alginolyticus
; Vibrionales
; virus
; virus identification
; water pollution
; White spot syndrome virus
; Yellow head virus
; animal
; biodiversity
; classification
; DNA sequence
; feces
; Gammaproteobacteria
; high throughput sequencing
; isolation and purification
; microbiology
; microflora
; pathogenicity
; Penaeidae
; virology
; Bali
; Greater Sunda Islands
; Indonesia
; Jakarta
; Jakarta Bay
; Java
; Lesser Sunda Islands
; Sunda Isles
; Bacteria (microorganisms)
; Crustacea
; Decapoda (Crustacea)
; Firmicutes
; Fusobacteria
; Infectious hypodermal and hematopoietic necrosis virus
; Penaeus monodon
; Photobacterium damselae
; Proteobacteria
; Shrimp white spot syndrome virus
; Vibrio alginolyticus
; Vibrionales
; Animals
; Bays
; Biodiversity
; Feces
; Gammaproteobacteria
; High-Throughput Nucleotide Sequencing
; Indonesia
; Microbiota
; Penaeidae
; Sequence Analysis, DNA
Scopus学科分类: Agricultural and Biological Sciences: Aquatic Science
; Earth and Planetary Sciences: Oceanography
; Environmental Science: Pollution
英文摘要: Penaeus monodon, the Asian black tiger shrimp is one of the most widely consumed marine crustaceans worldwide. In this study, we examine and compare the fecal microbiota of P. monodon from highly polluted waters around Jakarta Bay, with those of less polluted waters of Bali. Using next generation sequencing techniques, we identified potential bacterial pathogens and common viral diseases of shrimp. Proteobacteria (96.08%) was found to be the most predominant phylum, followed by Bacteriodetes (2.32%), Fusobacteria (0.96%), and Firmicutes (0.53%). On the order level, Vibrionales (66.20%) and Pseudoaltermonadales (24.81%) were detected as predominant taxa. qPCR profiling was used as a confirmatory step and further revealed Vibrio alginolyticus and Photobacterium damselae as two potential pathogenic species present in most of the samples. In addition, viral diseases for shrimp were discovered among the samples, WSSV in Jakarta free-living samples, YHV in Bali free-living samples and IHHNV in both. © 2016 Elsevier Ltd
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资源类型: 期刊论文
标识符: http://119.78.100.158/handle/2HF3EXSE/86773
Appears in Collections: 过去全球变化的重建 全球变化的国际研究计划
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作者单位: Leibniz-Institute for Natural Product Research and Infection Biology, Beutenbergstr. 11a, Jena, Germany; Friedrich Schiller University of Jena, Fürstengraben 1, Jena, Germany; Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia; Gondol Research Institute for Mariculture GRIM, ds Penyabangan, Br. Gondol, PO. Box 140, Singaraja, Bali, Indonesia
Recommended Citation:
Oetama V.S.P.,Hennersdorf P.,Abdul-Aziz M.A.,et al. Microbiome analysis and detection of pathogenic bacteria of Penaeus monodon from Jakarta Bay and Bali[J]. Marine Pollution Bulletin,2016-01-01,110(2)